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1.
Frontiers of Medicine ; (4): 91-100, 2021.
Article in English | WPRIM | ID: wpr-880951

ABSTRACT

Congenital heart disease (CHD) is the most common birth defect worldwide. Long non-coding RNAs (lncRNAs) have been implicated in many diseases. However, their involvement in CHD is not well understood. This study aimed to investigate the role of dysregulated lncRNAs in CHD. We used Gene Expression Omnibus data mining, bioinformatics analysis, and analysis of clinical tissue samples and observed that the novel lncRNA SAP30-2:1 with unknown function was significantly downregulated in damaged cardiac tissues from patients with CHD. Knockdown of lncRNA SAP30-2:1 inhibited the proliferation of human embryonic kidney and AC16 cells and decreased the expression of heart and neural crest derivatives expressed 2 (HAND2). Moreover, lncRNA SAP30-2:1 was associated with HAND2 by RNA immunoprecipitation. Overall, these results suggest that lncRNA SAP30-2:1 may be involved in heart development through affecting cell proliferation via targeting HAND2 and may thus represent a novel therapeutic target for CHD.


Subject(s)
Humans , Basic Helix-Loop-Helix Transcription Factors , Cell Proliferation , Heart Defects, Congenital/genetics , Histone Deacetylases , RNA, Long Noncoding/genetics , Transcription Factors
2.
Chinese Journal of Biotechnology ; (12): 956-963, 2018.
Article in Chinese | WPRIM | ID: wpr-687721

ABSTRACT

PPP2R2A is one of the regulatory subunits of the PP2A phosphatase complexes, and previous studies showed that its upregulation promotes cancer cell survival and growth. In this research, we used the tandem affinity purification and the HPLC-Chip-ESI/MS/MS mass spectrometry to screen the PPP2R2A-binding proteins and the results indicated that the GFPT-1/-2 were the potential partners of PPP2R2A. We further validated the interaction between PPP2R2A and GFPT-1/-2 through GST Pull-down, co-immunoprecipitation and immunofluorescence assays. And we found that knockdown of PPP2R2A by lentivirus-mediated shRNA enhanced the phosphorylation of GFPT2, whereas the phosphorylation of GFPT1 had no significant change. GFPT2 is a rate-limiting enzyme in the hexosamine pathway. Our results showed that the knockdown of PPP2R2A promoted the total cellular O-GlcNAcylation in MDA-MB-231 breast cancer cells. These results suggest that PPP2R2A interacts with GFPT1/2, and leads to the phosphorylation of GFPT2, which can regulate the cellular O-GlcNAcylation.

3.
Chinese Journal of Medical Genetics ; (6): 1-8, 2018.
Article in Chinese | WPRIM | ID: wpr-344140

ABSTRACT

The widespread application of next generation sequencing (NGS) in clinical settings has enabled testing, diagnosis, treatment and prevention of genetic diseases. However, many issues have arisen in the meanwhile. One of the most pressing issues is the lack of standards for reporting genetic test results across different service providers. The First Forum on Standards and Specifications for Clinical Genetic Testing was held to address the issue in Shenzhen, China, on October 28, 2017. Participants, including geneticists, clinicians, and representatives of genetic testing service providers, discussed problems of clinical genetic testing services across in China and shared opinions on principles, challenges, and standards for reporting clinical genetic test results. Here we summarize expert opinions presented at the seminar and report the consensus, which will serve as a basis for the development of standards and guidelines for reporting of clinical genetic testing results, in order to promote the standardization and regulation of genetic testing services in China.

4.
Journal of Breast Cancer ; : 330-333, 2018.
Article in English | WPRIM | ID: wpr-716742

ABSTRACT

In this study, we used next-generation sequencing methods to screen 300 individuals for BRCA1 and BRCA2. A novel mutation (c.849dupT) in BRCA2 was identified in a female patient and her unaffected brothers. This mutation leads to the truncation of BRCA2 functional domains. Moreover, BRCA2 mRNA expression levels in mutation carriers are significantly reduced compared to noncarriers. Immunofluorescence and western blot assays showed that this mutation resulted in reduced BRCA2 protein expression. Thus, we identified a novel mutation that damaged the function and expression of BRCA2 in a family with breast cancer history. The pedigree analysis suggested that this mutation is strongly associated with familial breast cancer. Genetic counsellors suggest that mutation carriers in this family undergo routine screening for breast cancer, as well as other malignancies, such as prostate and ovarian cancer. The effects of this BRCA2 mutation on drug resistance should be taken into consideration during treatment.


Subject(s)
Female , Humans , Blotting, Western , BRCA2 Protein , Breast Neoplasms , Breast , Drug Resistance , Fluorescent Antibody Technique , Genes, BRCA2 , High-Throughput Nucleotide Sequencing , Mass Screening , Nonsense Mediated mRNA Decay , Ovarian Neoplasms , Pedigree , Prostate , RNA, Messenger , Siblings
5.
Chinese Journal of Neonatology ; (6): 264-268, 2017.
Article in Chinese | WPRIM | ID: wpr-618000

ABSTRACT

Objective To establish the theoretical basis of the probiotic application among very low birth weight(VLBW) infants,the efficacy of probiotics on the gut microbiota of VLBW infants on the 14th postnatal day was studied.Method The VLBW infants admitted to BaoAn Maternal and Child Care Hospital from January 2015 to December 2015 were randomly assigned into probiotics group and placebo group.From the first feeding to corrected gestational age of 36 weeks,probiotics group was treated with a combination of Bifidobacterium and Lactobacillus while placebo group with placebo.Fecal samples were collected on the 1st and 14th postnatal day.Total bacterial DNA was extracted and sequenced using high-throughput 16S rRNA gene sequencing on MiSeq sequencing platform.Result A total of 21 VLBW infants were enrolled,9 in probiotics group and other 12 placebo group.No significant differences of clinical data existed between the two group (P > 0.05),The abundance and diversity of microflora (P > 0.05) on the first day between the two group were similar.Compared with placebo group,the relative abundance of Bifidobacterium and Lactobacillales in stool samples on the 14th day was significantly increased,while the Halomonas was significantly decreased.The relative abundance of the Shannon-index was increased,but without significant difference (P =0.16).Conclusion Enteral supplementation of probiotics in VLBW infants may increase probiotic bacterium and microflora diversity.

6.
Chinese Medical Journal ; (24): 1072-1077, 2016.
Article in English | WPRIM | ID: wpr-290123

ABSTRACT

<p><b>BACKGROUND</b>Gaucher's disease (GD) is an autosomal recessive disorder caused by a deficiency of acid β-glucosidase (glucocerebrosidase [GBA]) that results in the accumulation of glucocerebroside within macrophages. Many mutations have been reported to be associated with this disorder. This study aimed to discover more mutations and provide data for the genetic pattern of the gene, which will help the development of quick and accurate genetic diagnostic tools for this disease.</p><p><b>METHODS</b>Genomic DNA was obtained from peripheral blood leukocytes of the patient and Sanger sequencing is used to sequence GBA gene. Sequence alignments of mammalian β-GBA (GCase) and three-dimensional protein structure prediction of the mutation were made. A construct of this mutant and its compound heterozygous counterpart were used to measure GCase in vitro.</p><p><b>RESULTS</b>GCase is relatively conserved at p.T219A. This novel mutation differs from its wild-type in structure. Moreover, it also causes a reduction in GCase enzyme activity.</p><p><b>CONCLUSION</b>This novel mutation (c.655A>G, p.T219A) is a pathogenic missense mutation, which contributes to GD.</p>


Subject(s)
Child, Preschool , Humans , Male , Gaucher Disease , Genetics , Glucosylceramidase , Chemistry , Genetics , Models, Molecular , Mutation, Missense , Protein Structure, Tertiary , Sequence Analysis, DNA
7.
Chinese Medical Journal ; (24): 2403-2408, 2016.
Article in English | WPRIM | ID: wpr-307400

ABSTRACT

<p><b>BACKGROUND</b>The most typical cardiac abnormality is conotruncal defects (CTDs) in patients with 22q11 deletion syndrome (22q11DS). HIRA (histone cell cycle regulator) gene, as one of the candidate genes located at the critical region of 22q11DS, was reported as possibly relevant to CTD in animal models. This study aimed to analyze the level of expression of the HIRA gene in tetralogy of Fallot (TOF) patients and the potential DNA sequence variations in the promoter region.</p><p><b>METHODS</b>The messenger RNA (mRNA) expression was examined with quantitative real-time polymerase chain reaction in 39 myocardial tissues of the right ventricular outflow tract (RVOT) from TOF patients and 4 myocardial tissues of RVOT from noncardiac death children. The protein expression was detected using immunohistochemistry in 12 TOF patients and 4 controls. A total of 100 TOF cases and 200 healthy controls were recruited for DNA sequencing.</p><p><b>RESULTS</b>The mRNA and protein expressions of the HIRA gene in the myocardium of the TOF patients were both significantly lower as compared to the controls (P < 0.05). Five single nucleotide polymorphisms (SNPs), including g.4111A>G (rs1128399), g.4265C>A (rs4585115), g.4369T>G (rs2277837), g.4371C>A (rs148516780), and g.4543T>C (rs111802956), were found in the promoter region of the HIRA gene. There were no significant differences of frequencies in these SNPs between the TOF patients and the controls (P > 0.05).</p><p><b>CONCLUSION</b>The abnormal lower expression of the HIRA gene in the myocardium may participate in the pathogenesis of TOF.</p>


Subject(s)
Female , Humans , Male , Alleles , Cell Cycle Proteins , Genetics , Metabolism , Genotype , Histone Chaperones , Genetics , Metabolism , Immunohistochemistry , In Vitro Techniques , Myocardium , Metabolism , Polymorphism, Single Nucleotide , Genetics , RNA, Messenger , Genetics , Real-Time Polymerase Chain Reaction , Tetralogy of Fallot , Genetics , Metabolism , Transcription Factors , Genetics , Metabolism
8.
Chinese Journal of Pediatrics ; (12): 460-463, 2014.
Article in Chinese | WPRIM | ID: wpr-345766

ABSTRACT

<p><b>OBJECTIVE</b>To screen for genomic copy number variations (CNVs) in two unrelated neonates with multiple congenital abnormalities using Affymetrix SNP chip and try to find the critical region associated with congenital heart disease.</p><p><b>METHOD</b>Two neonates were tested for genomic copy number variations by using Cytogenetic SNP chip.Rare CNVs with potential clinical significance were selected of which deletion segments' size was larger than 50 kb and duplication segments' size was larger than 150 kb based on the analysis of ChAs software, without false positive CNVs and segments of normal population. The identified CNVs were compared with those of the cases in DECIPHER and ISCA databases.</p><p><b>RESULT</b>Eleven rare CNVs with size from 546.6-27 892 kb were identified in the 2 neonates. The deletion region and size of case 1 were 8p23.3-p23.1 (387 912-11 506 771 bp) and 11.1 Mb respectively, the duplication region and size of case 1 were 8p23.1-p11.1 (11 508 387-43 321 279 bp) and 31.8 Mb respectively. The deletion region and size of case 2 were 8p23.3-p23.1 (46 385-7 809 878 bp) and 7.8 Mb respectively, the duplication region and size of case 2 were 8p23.1-p11.21 (12 260 914-40 917 092 bp) and 28.7 Mb respectively. The comparison with Decipher and ISCA databases supported previous viewpoint that 8p23.1 had been associated with congenital heart disease and the region between 7 809 878-11 506 771 bp may play a role in the severe cardiac defects associated with 8p23.1 deletions. Case 1 had serious cardiac abnormalities whose GATA4 was located in the duplication segment and the copy number increased while SOX7 was located in the deletion segment and the copy number decreased.</p><p><b>CONCLUSION</b>The region between 7 809 878-11 506 771 bp in 8p23.1 is associated with heart defects and copy number variants of SOX7 and GATA4 may result in congenital heart disease.</p>


Subject(s)
Female , Humans , Infant, Newborn , Abnormalities, Multiple , Diagnostic Imaging , Genetics , Chromosome Deletion , Chromosome Duplication , Genetics , Chromosome Inversion , Chromosomes, Human, Pair 8 , Comparative Genomic Hybridization , DNA Copy Number Variations , Heart Defects, Congenital , Diagnostic Imaging , Genetics , Oligonucleotide Array Sequence Analysis , Polymorphism, Single Nucleotide , Ultrasonography
9.
Chinese Journal of Contemporary Pediatrics ; (12): 817-821, 2013.
Article in Chinese | WPRIM | ID: wpr-345700

ABSTRACT

<p><b>OBJECTIVE</b>To study the expression of histone acetyltransferases (HATs) and histone deacetylases (HDACs) in children with tetralogy of Fallot (TOF), and to investigate the role of histone acetylation and acetylation-related enzymes in the pathogenesis of TOF.</p><p><b>METHODS</b>Myocardial tissue samples in the TOF group were obtained from 46 children with TOF who underwent radical operation, and myocardial tissue samples in the control group were obtained from 16 children who suffered accidental deaths and had no cardiac anomalies as shown by autopsy. The acetylation of H3K9, H3K18 and H3K27 was evaluated by immunohistochemistry. The mRNA expression of HATs and HDACs in the myocardium was measured by real-time PCR. The correlation between mRNA expression of HATs and HDACs and histone acetylation was analyzed.</p><p><b>RESULTS</b>Compared with the control group, the TOF group showed significantly increased acetylation of H3K9 (P=0.0165) and significantly decreased acetylation of H3K18 (P=0.0048) and H3K27 (P=0.0084). As to 4 HATs and 6 HDACs, the mRNA expression of EP300 and CBP was significantly higher in the TOF group than in the control group (P=0.025; P=0.017), and there was no significant difference in the mRNA expression of other HATs and HDACs between the two groups. The correlation analysis revealed a positive correlation between H3K9 acetylation and mRNA expression of EP300 (r=0.71, P<0.01) and CBP (r=0.72, P<0.01).</p><p><b>CONCLUSIONS</b>Upregulated mRNA expression of EP300 and CBP may be associated with increased H3K9 acetylation, suggesting that EP300 and CBP might affect cardiac development by regulating H3K9 acetylation.</p>


Subject(s)
Female , Humans , Infant , Male , Acetylation , E1A-Associated p300 Protein , Genetics , Histone Acetyltransferases , Genetics , Histone Deacetylases , Genetics , Histones , Metabolism , Myocardium , Metabolism , Peptide Fragments , Genetics , RNA, Messenger , Sialoglycoproteins , Genetics , Tetralogy of Fallot , Metabolism
10.
Chinese Journal of Medical Genetics ; (6): 284-288, 2012.
Article in Chinese | WPRIM | ID: wpr-295493

ABSTRACT

<p><b>OBJECTIVE</b>To develop a method for enriching methylated DNA in clinical samples using mesocellular silica foams (MCFs) immobilized with methyl-CpG binding domain (MBD).</p><p><b>METHODS</b>MCFs with ultra-large pore size were synthesized, functionalized and immobilized with GST-MBD.</p><p><b>RESULTS</b>The large cage-like pore structures of MCF materials was retained after functionalization and immobilization, with pore diameter of 55 nm, window size of 30 nm, and a high pore volume of 1.0 cm(3)/g. The loading amount of MBD was as high as 53 wt%. Immobilized MBD showed high binding activity and stability. In a binding buffer with salt concentrations ranging 500-550 mmol/L, the MCF-MBD can selectively enrich methylated DNA from the mixed DNA solution.</p><p><b>CONCLUSION</b>The MCF-MBD method may offer a better choice for high-throughout DNA methylation screening, and has laid a foundation for clinical application, prenatal diagnosis and research on DNA methylation-related genetic diseases.</p>


Subject(s)
Animals , Rats , CpG Islands , DNA , Chemistry , Genetics , Metabolism , DNA Methylation , DNA-Binding Proteins , Chemistry , Immobilized Proteins , Chemistry , Protein Structure, Tertiary , Silicon Dioxide , Chemistry
11.
Chinese Medical Journal ; (24): 2021-2027, 2011.
Article in English | WPRIM | ID: wpr-319153

ABSTRACT

<p><b>BACKGROUND</b>The connexin43 knockout (Cx43 KO) mouse dies at birth with an enlarged conotruncal region, which leads to the obstruction of the right outflow tract (OFT). Since myocardialization of the proximal OFT septum is one of the key events during heart development, we investigated the process in the Cx43 KO embryo hearts. Rho associated coiled-coil forming protein kinase 1 (ROCK1), is a recently found key molecule to regulate the myocardialization of OFT, but its spatiotemporal expression pattern during myocardialization remains unknown. The objective of this study was to investigate the differentially expressed pattern of ROCK1 between Cx43 KO and wild type embryo hearts, and its relationship with the delayed myocardialization in Cx43 KO embryo hearts.</p><p><b>METHODS</b>Using immunohistochemistry, the processes of myocardiolization were investigated both in Cx43 KO and wild type embryo hearts. The differentially expressed pattern of ROCK1 between Cx43 KO and wildtype embryo hearts was evaluated both at the mRNA and protein level by real-time RT-PCR and immunohistochemistry.</p><p><b>RESULTS</b>The expression of α-sarcomeric actin (α-SCA) in the proximal OFT septum of Cx43 KO embryos was delayed. Meanwhile, it was shown that the downregulation of ROCK1 coincided with delayed myocardialization. The expression of ROCK1 protein was mainly limited to the proximal outflow tract septum from embryo day (E) E11.5 to E15.5. Its expression pattern was similar with that of α-SCA. Real-time RT-PCR found that the expression level of Rock-1 mRNA began at a low level on E11.5 and reached peak at E13.5 and E14.5.</p><p><b>CONCLUSIONS</b>ROCK1 may have an important role in the process of myocardialization of the proximal OFT septum. Downregulation of ROCK1 is likely to contribute to the aberrant myocardialization in Cx43 KO embryo hearts.</p>


Subject(s)
Animals , Mice , Actins , Metabolism , Connexin 43 , Genetics , Metabolism , Heart , Embryology , Heart Septum , Immunohistochemistry , Mice, Knockout , Myocardium , Metabolism , Pathology , Real-Time Polymerase Chain Reaction , rho-Associated Kinases , Genetics , Metabolism
12.
Journal of Biomedical Engineering ; (6): 326-331, 2011.
Article in Chinese | WPRIM | ID: wpr-306565

ABSTRACT

We tried to construct and identify the recombinant replication-deficient adenovirus vector coding for human tissue factor pathway inhibitor 2 (hTFPI-2) gene by AdMax system in HEK293 cells. Firstly, we obtained hTFPI-2 gene from the recombinant plasmid pIRES2-EGFP-TFPI-2 by PCR using primers with restriction endonuclease site of EcoRI or SacI. After digesting the hTFPI-2 gene and plasmid PDC316-IRES-EGFP shuttle vector, we ligated them with T4 ligase and formed the recombinant shuttle vector PDC316-IRES-EGFP-hTFPI-2. It was confirmed that the ligation product was inserted the gene of hTFPI-2 correctly by sequencing. Then we took cotransfection of HEK293 cells with the recombinant shuttle vector and genomic plasmid pBHGloxdeltaE1,3Cre by liposome lipofectamine2000, and finished the package of recombinant adenovirus Ad-hTFPI-2. The results of the PCR test and restriction endonuclease digestion confirmed the successful construction of the recombinants Ad-hTFPI-2. Furthermore, we measured the titre of Ad-hTFPI-2 with the aid of green fluorescence protein expression after multiplication and purification. The titre was 0.931 x 10(12) pfu/ml. Finally, we infected U937 monocytes by purified Ad-hTFPI-2, and determined the infection efficiency and the TFPI-2's level and activity. The efficiency of Ad-hTFPI-2 infection in U937 cells was 89.33%. After infected by Ad-hTFPI-2, the TFPI-2's level in supernatant increased about 7 fold. Also the TFPI-2 in supernatant had activities of inhibiting trypsin and plasmin. The recombinant adenovirus with the hTFPI-2 gene was constructed successfully. It will be helpful for the further investigation of its potentiality to be applied in antiatherosclerosis.


Subject(s)
Humans , Adenoviridae , Genetics , Metabolism , Defective Viruses , Genetics , Metabolism , Genetic Vectors , Genetics , Glycoproteins , Genetics , Monocytes , Metabolism , Recombinant Proteins , Genetics , Transfection , U937 Cells
13.
Journal of Forensic Medicine ; (6): 413-417, 2010.
Article in Chinese | WPRIM | ID: wpr-983602

ABSTRACT

OBJECTIVE@#To explore the relationship between the time-dependent level changes of microRNA and 18S rRNA and the different postmortem interval (PMI) in rat cardiac muscle.@*METHODS@#SD rats were sacrificed by cervical dislocation and placed at ambient temperature 25 degrees C with a humidity of 50%. Total RNA was extracted from the rat cardiac muscle at different time points after death. The levels of miR-1-2 and 18S rRNA were examined using real-time PCR in rat cardiac muscle. The results were expressed by cycle threshold (Ct) value to explore relationship between PMI and Ct value, and the regression functions were established to estimate PMI.@*RESULTS@#The miR-1-2 level in rat myocardial tissue showed no significant changes within 120 h after death, and then began to decline. The 18S rRNA level increased gradually within 96 h after death, and then declined slowly. The nonlinear relationships were established between Ct value (18S rRNA), deltaCt value (difference between 18S rRNA and miR-1-2) and PMI. The R2 of conics fitting were 0.9487 and 0.8072, respectively.@*CONCLUSION@#Ct value of 18S rRNA and deltaCt value present a good correlation with PMI, and can be markers for estimating early PMI.


Subject(s)
Animals , Male , Rats , Forensic Pathology , MicroRNAs/metabolism , Myocardium/pathology , Postmortem Changes , RNA Stability , RNA, Messenger/metabolism , RNA, Ribosomal, 18S/metabolism , Random Allocation , Rats, Sprague-Dawley , Real-Time Polymerase Chain Reaction/methods , Time Factors
14.
Chinese Journal of Oncology ; (12): 650-654, 2010.
Article in Chinese | WPRIM | ID: wpr-293534

ABSTRACT

<p><b>OBJECTIVE</b>To identify potential miRNA involved in epithelial ovarian cancer (EOC) invasion and metastasis.</p><p><b>METHODS</b>miRNA microarray was applied to compare the miRNA expression profile between SKOV-3ip and SKOV-3 cells. Bioinformatics programs (TargetScan, MicroCosm, PicTar and GO) were used to analyze the miRNA and their potential target genes. Real-time RT-PCR was used to confirm the results of microarray and for expanding detection in another paired EOC cell lines (HO-8910 and HO-8910PM).</p><p><b>RESULTS</b>Totally, expressions of 42 miRNA were found significantly different between SKOV-3ip and SKOV-3 cells. Among them, 10 miRNA were down-regulated, including let-7a, let-7f, miR-22 and miR-886-5p; while 32 were up-regulated, for example, let-7e and miR-519e. Bioinformatic analysis indicated that let-7a, let-7e, let-7f, miR-22 and miR-886-5p may be involved in cancer invasion and metastasis. Meanwhile, real-time RT-PCR confirmation and statistic analysis showed that let-7f and miR-22 expressions were significantly different between ovarian cancer cell lines with various invasive and metastatic capacity (P < 0.05).</p><p><b>CONCLUSION</b>The expression of let-7f and miR-22 is low in ovarian cancer cells with high invasive and metastatic capacity. It suggests that they are potential tumor suppressor genes. Further research on their role and mechanism is needed.</p>


Subject(s)
Female , Humans , Cell Line, Tumor , Cystadenocarcinoma, Serous , Genetics , Metabolism , Pathology , Gene Expression Profiling , MicroRNAs , Genetics , Metabolism , Microarray Analysis , Methods , Neoplasm Invasiveness , Neoplasm Metastasis , Ovarian Neoplasms , Genetics , Metabolism , Pathology
15.
Chinese Medical Journal ; (24): 569-573, 2010.
Article in English | WPRIM | ID: wpr-314542

ABSTRACT

<p><b>BACKGROUND</b>Multiple endocrine neoplasia type 1 (MEN1) is an autosomal dominant cancer syndrome which is caused by germline mutations of the tumor suppressor gene MEN1. This study aimed to identify mutations in a Chinese pedigree with MEN1.</p><p><b>METHODS</b>A large Chinese family with MEN1 was collected. All of the coded regions and their adjacent sequences of the MEN1 gene were amplified and sequenced.</p><p><b>RESULTS</b>In this family, a heterozygous cytosine insertion in exon 10 (c.1546_1547insC) inducing a frame shift mutation of MEN1 was found in the proband and the other two suffering members of his family. This mutation was linked to a novel single nucleotide polymorphism (SNP) in intron 3 (IVS3 + 18C > T).</p><p><b>CONCLUSIONS</b>The mutation in exon 10 of MEN1 gene might induce development of parathyroid hyperplasia and pituitary adenoma and cosegregate with MEN1 syndrome. The significance of the new found IVS3 + 18C > T of MEN1 needs a further investigation.</p>


Subject(s)
Humans , Male , Middle Aged , Multiple Endocrine Neoplasia Type 1 , Genetics , Mutation , Polymorphism, Single Nucleotide , Proto-Oncogene Proteins , Genetics , Sequence Analysis, DNA
16.
Chinese Journal of Medical Genetics ; (6): 162-165, 2010.
Article in Chinese | WPRIM | ID: wpr-349020

ABSTRACT

Zinc finger nuclease (ZFN), which is a chimeric fusion structure between a Cys2-His2 zinc-finger protein (ZFP) and the cleavage domain of Fok I endonuclease, can be used to introduce targeted double-stranded breaks (DSBs). ZFN-mediated cleavage leads to mutations when double-stranded breaks are repaired by homologous recombination (HR) or nonhomologous end joining (NHEJ). In recent years, ZFNs are widely used in the fields of genetic research. In this review, the methodology and technical advantages of ZFNs were briefly discussed.


Subject(s)
Animals , Humans , Deoxyribonucleases, Type II Site-Specific , Chemistry , Genetics , Metabolism , Zinc Fingers
17.
Chinese Journal of Obstetrics and Gynecology ; (12): 754-759, 2009.
Article in Chinese | WPRIM | ID: wpr-392419

ABSTRACT

Objective To profile methylation alterations of cytosine-phosphate-guanosine islands (CGI)in epithelial ovarian cancer and investigate its applications for finding new candidate tumor markers.Methods Cancer cells were obtained by lager microdissection from 20 tissues of frozen-preserved epithelial ovarian tumors.Primary cultured epithelial cells were isolated from 5 tissues of normal ovaries.Differential methylation hybridization(DMH)based on microarray assay Was conducted using DNA to construct the aberrant DNA methylation pattern of epithelial ovarian cancer.MethyLight was conducted to verify the methylation status of 7 hypomethylated promoter CGI detected by DMH in tumor tissues of 87 patients with epithelial ovarian cancer and 42 patients with benigh ovarian diseases.Results The aberrant DNA methylation pattem of epithelial ovarian cancer were included 182 hypermethylated loci and 64 hypomethylated loci,of which the positive loci located more than 25%arrays were 18 and 31,respectively.The methylation ratio of gene LSM2,EGFLAM and CDKN2A in tissue DNA of patients with epithelial ovarian cancer and benign ovarian diseases Was 11%(10/87)versus 33%(14/42),8%(7/87)versus 21%(9/42),9%(8/87)versus 31%(13/42),respectively,which Was significantly decreased in tissues DNA of ovarian cancer than that from benigh ovarian diseases(P<0.05).Conclusions The aberrant DNA methylation pattern of epithelial ovarian cancer is important for finding new cancer related genes.The promoter CGI of gene ISM2,EGFIAM and CDKN2A may be Hovel candidate for ovarian cancerspecific hypomethylated tumor markers.

18.
Chinese Journal of Pathology ; (12): 754-759, 2008.
Article in Chinese | WPRIM | ID: wpr-315077

ABSTRACT

<p><b>OBJECTIVE</b>To study the biological impact and mechanism of recombinant tissue factor pathway inhibitor (rTFPI) on apoptosis of rat kidney mesangial cells (MsC).</p><p><b>METHODS</b>TFPI expression in human glomerular minor lesion (GML), mesangial proliferative glomerulonephritis (MPGN) and cultured rat MsC was detected using immunohistochemistry and immunofluorescence, respectively. Rat MsC were incubated with rTFPI and its variant peptides. Morphological changes of apoptosis were investigated by Hoechst 33258 and the apoptotic rate was assessed by flow cytometry. DNA fragmentation and effect of rTFPI on expression of caspase-3, Fas and bcl-2 were studied using gel electrophoresis and Western blot respectively.</p><p><b>RESULTS</b>The expression of TFPI in MPGN was higher than that in GML. TFPI was expressed in cultured rat mesangial cells. Apoptosis of MsC was induced by rTFPI, especially by its C-termianl, in a dose- and time-dependent manner. Apoptosis ratios of MsC treated with rTFPI were 2.1, 3.0 and 4.9 times more than control, respectively. Expression of gene caspase-3 and Fas was up-regulated in a dose-dependent manner wherease bcl-2 expression did not show any changes.</p><p><b>CONCLUSION</b>rTFPI induces apoptosis in cultured rat mesangial cells by its C-terminal possibly via Fas/FasL pathway.</p>


Subject(s)
Animals , Humans , Rats , Apoptosis , Physiology , Caspase 3 , Metabolism , Cells, Cultured , DNA Fragmentation , Flow Cytometry , Lipoproteins , Metabolism , Pharmacology , Mesangial Cells , Cell Biology , Metabolism , Peptides , Pharmacology , bcl-Associated Death Protein , Metabolism , Pharmacology
19.
Chinese Journal of Hematology ; (12): 606-610, 2006.
Article in Chinese | WPRIM | ID: wpr-328412

ABSTRACT

<p><b>OBJECTIVE</b>To clone the human tissue factor pathway inhibitor-2 (hTFPI-2) gene and express it by using prokaryotic expression system.</p><p><b>METHODS</b>The hTFPI-2 coding region was obtained by RT-PCR from human placenta total RNA. The coding fragment was then inserted into prokaryotic expression vector pET19b and expressed in E. coli BL21 by IPTG induction. The produced inclusion bodies were dissolved by denaturalizing chemicals, purified by ion exchange chromatograph, and refolded in air to form proper disulfide bonds. Chromogenic and gelatin zymography methods were used to evaluate the inhibiting effects of hTFPI-2 on trypsin, plasmin and MMPs individually. The inhibitory activity of hTFPI-2 on fabrisarcoma was investigated by matrigel.</p><p><b>RESULTS</b>The coding fragment of hTFPI-2 was cloned successfully and the protein was expressed as inclusion bodies which account for 20% - 30% of total host protein. The refolded hTFPI-2 could inhibit the invasive ability of fibrisarcoma HT-1080 as well as activity of plasmin, trypsin and MMPs.</p><p><b>CONCLUSIONS</b>The activated hTFPI-2 is obtained by using prokaryotic expressed system effectively.</p>


Subject(s)
Humans , Cloning, Molecular , Escherichia coli , Metabolism , Gene Expression , Glycoproteins , Genetics , Placenta , Cell Biology , RNA , Reverse Transcriptase Polymerase Chain Reaction
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